Comparative transcriptome analysis of two citrus germplasms with contrasting susceptibility to Phytophthora nicotianae provides new insights into tolerance mechanisms.
Identifieur interne : 000819 ( Main/Exploration ); précédent : 000818; suivant : 000820Comparative transcriptome analysis of two citrus germplasms with contrasting susceptibility to Phytophthora nicotianae provides new insights into tolerance mechanisms.
Auteurs : Arwa Ajengui [Tunisie, Italie] ; Edoardo Bertolini [Italie] ; Angela Ligorio [Italie] ; Samir Chebil [Tunisie] ; Antonio Ippolito [Italie] ; Simona Marianna Sanzani [Italie]Source :
- Plant cell reports [ 1432-203X ] ; 2018.
Descripteurs français
- KwdFr :
- Analyse de profil d'expression de gènes (méthodes), Citrus (classification), Citrus (génétique), Citrus (microbiologie), Graines (génétique), Graines (microbiologie), Gènes de plante (génétique), Interactions hôte-pathogène (MeSH), Maladies des plantes (génétique), Maladies des plantes (microbiologie), Phytophthora (physiologie), Régulation de l'expression des gènes végétaux (MeSH), Résistance à la maladie (génétique), Spécificité d'espèce (MeSH), Transcriptome (MeSH).
- MESH :
- génétique : Citrus, Graines, Gènes de plante, Maladies des plantes, Résistance à la maladie.
- microbiologie : Citrus, Graines, Maladies des plantes.
- méthodes : Analyse de profil d'expression de gènes.
- physiologie : Phytophthora.
- classification : Citrus, Interactions hôte-pathogène, Régulation de l'expression des gènes végétaux, Spécificité d'espèce, Transcriptome.
English descriptors
- KwdEn :
- Citrus (classification), Citrus (genetics), Citrus (microbiology), Disease Resistance (genetics), Gene Expression Profiling (methods), Gene Expression Regulation, Plant (MeSH), Genes, Plant (genetics), Host-Pathogen Interactions (MeSH), Phytophthora (physiology), Plant Diseases (genetics), Plant Diseases (microbiology), Seeds (genetics), Seeds (microbiology), Species Specificity (MeSH), Transcriptome (MeSH).
- MESH :
- classification : Citrus.
- genetics : Citrus, Disease Resistance, Genes, Plant, Plant Diseases, Seeds.
- methods : Gene Expression Profiling.
- microbiology : Citrus, Plant Diseases, Seeds.
- physiology : Phytophthora.
- Gene Expression Regulation, Plant, Host-Pathogen Interactions, Species Specificity, Transcriptome.
Abstract
KEY MESSAGE
Host perception of Phytophthora nicotianae switching to necrotrophy is fundamental for disease tolerance of citrus. It involves an HR-like response, strengthening of the cell wall structure and hormonal signaling. Stem rot caused by P. nicotianae is a worldwide disease of several important crops, including citrus. Given the growing awareness of chemical fungicides drawbacks, genetic improvement of citrus rootstocks remains the best alternative. However, the molecular basis underlying the successful response of resistant and/or tolerant genotypes remains poorly understood. Therefore, we performed a transcriptomic analysis to examine the differential defense response to P. nicotianae of two germplasms-tolerant sour orange (SO, Citrus aurantium) and susceptible Madam Vinous (MV, C. sinensis)-in both the biotrophic and necrotrophic phases of host-pathogen interaction. Our results revealed the necrotrophic phase as a decisive turning point, since it included stronger modulation of a number of genes implicated in pathogen perception, signal transduction, HR-like response, transcriptional reprogramming, hormone signaling, and cell wall modifications. In particular, the pathogen perception category reflected the ability of SO to perceive the pathogen even after its switch to necrotrophy, and thus to cope successfully with the infection, while MV failed. The concomitant changes in genes involved in the remaining functional categories seemed to prevent pathogen spread. This investigation provided further understanding of the successful defense mechanisms of C. aurantium against P. nicotianae, which might be exploited in post-genomic strategies to develop resistant Citrus genotypes.
DOI: 10.1007/s00299-017-2244-7
PubMed: 29290008
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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sort="Ligorio, Angela" uniqKey="Ligorio A" first="Angela" last="Ligorio">Angela Ligorio</name><affiliation wicri:level="1"><nlm:affiliation>Dipartimento di Scienze del Suolo, della Pianta e degli Alimenti, Università degli Studi di Bari "Aldo Moro", Via Amendola 165/A, 70126, Bari, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Dipartimento di Scienze del Suolo, della Pianta e degli Alimenti, Università degli Studi di Bari "Aldo Moro", Via Amendola 165/A, 70126, Bari</wicri:regionArea><wicri:noRegion>Bari</wicri:noRegion></affiliation></author><author><name sortKey="Chebil, Samir" sort="Chebil, Samir" uniqKey="Chebil S" first="Samir" last="Chebil">Samir Chebil</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Plant Molecular Physiology, Center of Biotechnology of Borj-Cédria, 2050, Hammam-Lif, Tunisia.</nlm:affiliation><country xml:lang="fr">Tunisie</country><wicri:regionArea>Laboratory of Plant Molecular Physiology, Center of 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Scienze del Suolo, della Pianta e degli Alimenti, Università degli Studi di Bari "Aldo Moro", Via Amendola 165/A, 70126, Bari, Italy. simonamarianna.sanzani@uniba.it.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Dipartimento di Scienze del Suolo, della Pianta e degli Alimenti, Università degli Studi di Bari "Aldo Moro", Via Amendola 165/A, 70126, Bari</wicri:regionArea><wicri:noRegion>Bari</wicri:noRegion></affiliation></author></analytic><series><title level="j">Plant cell reports</title><idno type="eISSN">1432-203X</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Citrus (classification)</term><term>Citrus (genetics)</term><term>Citrus (microbiology)</term><term>Disease Resistance (genetics)</term><term>Gene Expression Profiling (methods)</term><term>Gene Expression Regulation, Plant (MeSH)</term><term>Genes, Plant (genetics)</term><term>Host-Pathogen Interactions (MeSH)</term><term>Phytophthora (physiology)</term><term>Plant Diseases (genetics)</term><term>Plant Diseases (microbiology)</term><term>Seeds (genetics)</term><term>Seeds (microbiology)</term><term>Species Specificity (MeSH)</term><term>Transcriptome (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de profil d'expression de gènes (méthodes)</term><term>Citrus (classification)</term><term>Citrus (génétique)</term><term>Citrus (microbiologie)</term><term>Graines (génétique)</term><term>Graines (microbiologie)</term><term>Gènes de plante (génétique)</term><term>Interactions hôte-pathogène (MeSH)</term><term>Maladies des plantes (génétique)</term><term>Maladies des plantes (microbiologie)</term><term>Phytophthora (physiologie)</term><term>Régulation de l'expression des gènes végétaux (MeSH)</term><term>Résistance à la maladie (génétique)</term><term>Spécificité d'espèce (MeSH)</term><term>Transcriptome (MeSH)</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Citrus</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Citrus</term><term>Disease Resistance</term><term>Genes, Plant</term><term>Plant Diseases</term><term>Seeds</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Citrus</term><term>Graines</term><term>Gènes de plante</term><term>Maladies des plantes</term><term>Résistance à la maladie</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Gene Expression Profiling</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Citrus</term><term>Graines</term><term>Maladies des plantes</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Citrus</term><term>Plant Diseases</term><term>Seeds</term></keywords><keywords scheme="MESH" qualifier="méthodes" xml:lang="fr"><term>Analyse de profil d'expression de gènes</term></keywords><keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Phytophthora</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Gene Expression Regulation, Plant</term><term>Host-Pathogen Interactions</term><term>Species Specificity</term><term>Transcriptome</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="fr"><term>Citrus</term><term>Interactions hôte-pathogène</term><term>Régulation de l'expression des gènes végétaux</term><term>Spécificité d'espèce</term><term>Transcriptome</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>KEY MESSAGE</b></p><p>Host perception of Phytophthora nicotianae switching to necrotrophy is fundamental for disease tolerance of citrus. It involves an HR-like response, strengthening of the cell wall structure and hormonal signaling. Stem rot caused by P. nicotianae is a worldwide disease of several important crops, including citrus. Given the growing awareness of chemical fungicides drawbacks, genetic improvement of citrus rootstocks remains the best alternative. However, the molecular basis underlying the successful response of resistant and/or tolerant genotypes remains poorly understood. Therefore, we performed a transcriptomic analysis to examine the differential defense response to P. nicotianae of two germplasms-tolerant sour orange (SO, Citrus aurantium) and susceptible Madam Vinous (MV, C. sinensis)-in both the biotrophic and necrotrophic phases of host-pathogen interaction. Our results revealed the necrotrophic phase as a decisive turning point, since it included stronger modulation of a number of genes implicated in pathogen perception, signal transduction, HR-like response, transcriptional reprogramming, hormone signaling, and cell wall modifications. In particular, the pathogen perception category reflected the ability of SO to perceive the pathogen even after its switch to necrotrophy, and thus to cope successfully with the infection, while MV failed. The concomitant changes in genes involved in the remaining functional categories seemed to prevent pathogen spread. This investigation provided further understanding of the successful defense mechanisms of C. aurantium against P. nicotianae, which might be exploited in post-genomic strategies to develop resistant Citrus genotypes.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">29290008</PMID><DateCompleted><Year>2018</Year><Month>09</Month><Day>04</Day></DateCompleted><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-203X</ISSN><JournalIssue CitedMedium="Internet"><Volume>37</Volume><Issue>3</Issue><PubDate><Year>2018</Year><Month>Mar</Month></PubDate></JournalIssue><Title>Plant cell reports</Title><ISOAbbreviation>Plant Cell Rep</ISOAbbreviation></Journal><ArticleTitle>Comparative transcriptome analysis of two citrus germplasms with contrasting susceptibility to Phytophthora nicotianae provides new insights into tolerance mechanisms.</ArticleTitle><Pagination><MedlinePgn>483-499</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00299-017-2244-7</ELocationID><Abstract><AbstractText Label="KEY MESSAGE" NlmCategory="UNASSIGNED">Host perception of Phytophthora nicotianae switching to necrotrophy is fundamental for disease tolerance of citrus. It involves an HR-like response, strengthening of the cell wall structure and hormonal signaling. Stem rot caused by P. nicotianae is a worldwide disease of several important crops, including citrus. Given the growing awareness of chemical fungicides drawbacks, genetic improvement of citrus rootstocks remains the best alternative. However, the molecular basis underlying the successful response of resistant and/or tolerant genotypes remains poorly understood. Therefore, we performed a transcriptomic analysis to examine the differential defense response to P. nicotianae of two germplasms-tolerant sour orange (SO, Citrus aurantium) and susceptible Madam Vinous (MV, C. sinensis)-in both the biotrophic and necrotrophic phases of host-pathogen interaction. Our results revealed the necrotrophic phase as a decisive turning point, since it included stronger modulation of a number of genes implicated in pathogen perception, signal transduction, HR-like response, transcriptional reprogramming, hormone signaling, and cell wall modifications. In particular, the pathogen perception category reflected the ability of SO to perceive the pathogen even after its switch to necrotrophy, and thus to cope successfully with the infection, while MV failed. The concomitant changes in genes involved in the remaining functional categories seemed to prevent pathogen spread. This investigation provided further understanding of the successful defense mechanisms of C. aurantium against P. nicotianae, which might be exploited in post-genomic strategies to develop resistant Citrus genotypes.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Ajengui</LastName><ForeName>Arwa</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Laboratory of Plant Molecular Physiology, Center of Biotechnology of Borj-Cédria, 2050, Hammam-Lif, Tunisia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Dipartimento di Scienze del Suolo, della Pianta e degli Alimenti, Università degli Studi di Bari "Aldo Moro", Via Amendola 165/A, 70126, Bari, Italy.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Faculté des Sciences de Tunis, LR03ES03 Laboratoire Microorganismes et Biomolécules Actives, Université Tunis El Manar, 2092, Tunis, Tunisia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bertolini</LastName><ForeName>Edoardo</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>Institute of Life Sciences, Scuola Superiore Sant'Anna, Piazza Martiri della Libertà 33, 56127, Pisa, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ligorio</LastName><ForeName>Angela</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Dipartimento di Scienze del Suolo, della Pianta e degli Alimenti, Università degli Studi di Bari "Aldo Moro", Via Amendola 165/A, 70126, Bari, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chebil</LastName><ForeName>Samir</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Laboratory of Plant Molecular Physiology, Center of Biotechnology of Borj-Cédria, 2050, Hammam-Lif, Tunisia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ippolito</LastName><ForeName>Antonio</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Dipartimento di Scienze del Suolo, della Pianta e degli Alimenti, Università degli Studi di Bari "Aldo Moro", Via Amendola 165/A, 70126, Bari, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sanzani</LastName><ForeName>Simona Marianna</ForeName><Initials>SM</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-1631-638X</Identifier><AffiliationInfo><Affiliation>Dipartimento di Scienze del Suolo, della Pianta e degli Alimenti, Università degli Studi di Bari "Aldo Moro", Via Amendola 165/A, 70126, Bari, Italy. simonamarianna.sanzani@uniba.it.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D003160">Comparative Study</PublicationType><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2017</Year><Month>12</Month><Day>30</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Plant Cell Rep</MedlineTA><NlmUniqueID>9880970</NlmUniqueID><ISSNLinking>0721-7714</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D002957" MajorTopicYN="N">Citrus</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D060467" MajorTopicYN="N">Disease Resistance</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020869" MajorTopicYN="N">Gene Expression Profiling</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="N">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="Y">Gene Expression Regulation, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017343" MajorTopicYN="N">Genes, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D054884" MajorTopicYN="N">Host-Pathogen Interactions</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010838" MajorTopicYN="N">Phytophthora</DescriptorName><QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012639" MajorTopicYN="N">Seeds</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D013045" MajorTopicYN="N">Species Specificity</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D059467" MajorTopicYN="Y">Transcriptome</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Citrus aurantium</Keyword><Keyword MajorTopicYN="N">Citrus sinensis</Keyword><Keyword MajorTopicYN="N">Differential expression analysis</Keyword><Keyword MajorTopicYN="N">Phytophthora stem rot</Keyword><Keyword MajorTopicYN="N">RNA-sequencing</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2017</Year><Month>05</Month><Day>25</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2017</Year><Month>12</Month><Day>26</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2018</Year><Month>1</Month><Day>1</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2018</Year><Month>9</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2018</Year><Month>1</Month><Day>1</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">29290008</ArticleId><ArticleId IdType="doi">10.1007/s00299-017-2244-7</ArticleId><ArticleId IdType="pii">10.1007/s00299-017-2244-7</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Italie</li><li>Tunisie</li></country><region><li>Gouvernorat de Tunis</li><li>Toscane</li></region><settlement><li>Pise</li><li>Tunis</li></settlement></list><tree><country name="Tunisie"><noRegion><name sortKey="Ajengui, Arwa" sort="Ajengui, Arwa" uniqKey="Ajengui A" first="Arwa" last="Ajengui">Arwa Ajengui</name></noRegion><name sortKey="Ajengui, Arwa" sort="Ajengui, Arwa" uniqKey="Ajengui A" first="Arwa" last="Ajengui">Arwa Ajengui</name><name sortKey="Chebil, Samir" sort="Chebil, Samir" uniqKey="Chebil S" first="Samir" last="Chebil">Samir Chebil</name></country><country name="Italie"><noRegion><name sortKey="Ajengui, Arwa" sort="Ajengui, Arwa" uniqKey="Ajengui A" first="Arwa" last="Ajengui">Arwa Ajengui</name></noRegion><name sortKey="Bertolini, Edoardo" sort="Bertolini, Edoardo" uniqKey="Bertolini E" first="Edoardo" last="Bertolini">Edoardo Bertolini</name><name sortKey="Ippolito, Antonio" sort="Ippolito, Antonio" uniqKey="Ippolito A" first="Antonio" last="Ippolito">Antonio Ippolito</name><name sortKey="Ligorio, Angela" sort="Ligorio, Angela" uniqKey="Ligorio A" first="Angela" last="Ligorio">Angela Ligorio</name><name sortKey="Sanzani, Simona Marianna" sort="Sanzani, Simona Marianna" uniqKey="Sanzani S" first="Simona Marianna" last="Sanzani">Simona Marianna Sanzani</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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